STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1317PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: bte:BTH_I0513 FHA domain-containing protein. (168 aa)    
Predicted Functional Partners:
Plim_0252
PFAM: pentapeptide repeat protein; KEGG: scl:sce2720 hypothetical protein.
  
    0.679
Plim_2196
PFAM: Abortive infection protein; KEGG: predicted protein.
  
     0.622
Plim_1318
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mca:MCA0453 ParA family protein.
 
     0.619
Plim_0058
KEGG: mxa:MXAN_5780 putative efflux ABC transporter, permease protein PilI.
  
     0.569
Plim_0622
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase central region; dehydrogenase E1 component; KEGG: scl:sce5670 alpha-ketoglutarate decarboxylase.
    
 
 0.514
Plim_2188
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: BRCT domain protein; Tetratricopeptide domain protein; KEGG: scl:sce3861 MerR family transcriptional regulator.
 
    0.478
Plim_1316
PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: Phosphoglucomutase/phosphomannomutase, C- terminal domain containing protein; K01840 phosphomannomutase.
       0.424
Plim_0734
PFAM: protein of unknown function DUF820; KEGG: mrd:Mrad2831_3531 hypothetical protein.
  
     0.414
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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