Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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Score
Plim_1322Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (439 aa)    
Predicted Functional Partners:
Plim_2389
KEGG: bcy:Bcer98_3579 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.993
Plim_2390
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bcy:Bcer98_3575 FeS assembly protein SufB.
 
 0.989
Plim_1321
PFAM: nitrogen-fixing NifU domain protein; KEGG: pin:Ping_1504 SUF system FeS assembly protein, NifU family protein.
 
 
 0.987
Plim_2391
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: bha:BH3470 hypothetical protein.
 
 0.952
Plim_1633
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: scl:sce7636 thioredoxin-disulfide reductase.
  
 
  0.904
Plim_0611
Cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: afw:Anae109_3845 cystathionine gamma-lyase.
     
 0.901
Plim_0233
PFAM: Fe-S metabolism associated SufE; KEGG: atc:AGR_C_1673 hypothetical 15.6 kDa protein in MucR 3'region (orf5).
  
 
 0.788
Plim_2392
PFAM: protein of unknown function DUF59; Rieske [2Fe-2S] domain protein; KEGG: oca:OCAR_4240 NifU protein.
 
  
 0.670
Plim_3794
Cysteine desulfurase.
  
 
0.585
purE
Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.423
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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