Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1327KEGG: tmz:Tmz1t_2298 hypothetical protein. (252 aa)    
Predicted Functional Partners:
Plim_1326
KEGG: pla:Plav_2530 nucleotidyltransferase/DNA polymerase.
 
  
 0.991
dnaE2
DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.
 
  
 0.954
Plim_0305
DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; KEGG: oan:Oant_2282 DNA-directed DNA polymerase.
  
  
 0.874
Plim_1254
KEGG: hne:HNE_0811 hypothetical protein.
  
  
 0.801
Plim_1328
PFAM: protein of unknown function DUF159; KEGG: gsu:GSU0040 hypothetical protein; Belongs to the SOS response-associated peptidase family.
       0.586
Plim_1265
KEGG: gsu:GSU1401 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein.
  
  
 0.443
Plim_4016
PDZ/DHR/GLGF domain protein.
  
     0.412
Plim_0670
KEGG: noc:Noc_0152 secretion protein HlyD.
  
     0.410
Plim_0513
Hypothetical protein; KEGG: amc:MADE_03505 possible biopolymer transport protein, ExbB family.
  
     0.406
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.