STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1372KEGG: abo:ABO_0802 hypothetical protein. (188 aa)    
Predicted Functional Partners:
Plim_0154
SMART: HTTM domain protein; KEGG: bba:Bd2937 hypothetical protein.
  
     0.725
Plim_0090
Conserved hypothetical protein; KEGG: outer membrane efflux protein.
  
     0.696
Plim_2238
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: aba:Acid345_2146 transglutaminase-like.
  
     0.614
Plim_2239
PFAM: protein of unknown function DUF58; KEGG: gur:Gura_0188 hypothetical protein.
  
     0.598
Plim_0418
PFAM: protein of unknown function DUF883 ElaB; KEGG: CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.542
Plim_3319
Similar to plant photosystem II stability/assembly factor.
  
     0.530
Plim_2465
PFAM: major facilitator superfamily MFS_1; KEGG: pca:Pcar_2468 putative transport protein.
  
     0.513
Plim_1332
KEGG: aba:Acid345_4318 hypothetical protein.
  
     0.510
Plim_0574
PFAM: Haemagluttinin repeat-containing protein; KEGG: dal:Dalk_0372 filamentous hemagglutinin family outer membrane protein.
  
     0.507
Plim_1806
Hypothetical protein; KEGG: sushi-domain containing secreted protein; with a signal peptide, low complexity region followed by a sushi domain.
  
     0.503
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.