Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_1377PFAM: UvrD/REP helicase; KEGG: afw:Anae109_1357 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. (1226 aa)    
Predicted Functional Partners:
Plim_2361
KEGG: ade:Adeh_2513 ATP-dependent nuclease subunit B-like.
 
 
 0.994
Plim_2188
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: BRCT domain protein; Tetratricopeptide domain protein; KEGG: scl:sce3861 MerR family transcriptional regulator.
  
 
 0.536
Plim_1376
PFAM: peptidase M42 family protein; peptidase M18 aminopeptidase I; KEGG: peptidase M42 family protein.
       0.531
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.522
Plim_3885
O-antigen polymerase; KEGG: proteophosphoglycan ppg4.
  
     0.522
Plim_1808
PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; KEGG: slo:Shew_2289 glycosy hydrolase family protein.
  
     0.518
Plim_3850
Hypothetical protein.
  
     0.513
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.498
Plim_3095
Secretory protein YscJ/FliF family protein.
  
     0.491
Plim_0574
PFAM: Haemagluttinin repeat-containing protein; KEGG: dal:Dalk_0372 filamentous hemagglutinin family outer membrane protein.
  
     0.489
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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