Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1382KEGG: ccs:CCNA_02102 glycosyl hydrolase. (296 aa)    
Predicted Functional Partners:
Plim_0363
PFAM: glucose sorbosone dehydrogenase; KEGG: hypothetical protein.
 
      0.744
Plim_3405
Protein of unknown function DUF1080.
 
     0.622
Plim_1708
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_6142 hypothetical protein.
 
     0.608
Plim_3945
Protein of unknown function DUF1080; KEGG: bte:BTH_II2095 diaminopimelate decarboxylase, putative.
  
     0.604
Plim_0676
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_2979 hypothetical protein.
  
     0.591
Plim_0038
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_2979 hypothetical protein.
  
     0.589
Plim_1899
SMART: Rhodanese domain protein; KEGG: cbc:CbuK_2007 rhodanese-related sulfurtransferase.
 
      0.575
Plim_3796
Protein of unknown function DUF1080.
  
     0.575
Plim_0627
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.
  
     0.562
Plim_2356
PFAM: protein of unknown function DUF1080; KEGG: pnu:Pnuc_1112 hypothetical protein.
  
     0.547
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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