Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_1386PFAM: Uracil-DNA glycosylase superfamily; KEGG: mxa:MXAN_3589 putative uracil-DNA glycosylase, family 4. (236 aa)    
Predicted Functional Partners:
Plim_0200
TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: tgr:Tgr7_2152 phage SPO1 DNA polymerase- related protein.
  
  
  0.921
Plim_1385
PFAM: Rhomboid family protein; KEGG: asa:ASA_4287 GlpG protein.
       0.757
Plim_1384
KEGG: noc:Noc_1301 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; protein of unknown function DUF1605; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; AAA ATPase.
       0.651
Plim_4113
Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
    
 0.624
Plim_1236
PFAM: peptidase M22 glycoprotease; KEGG: pca:Pcar_1913 metal-dependent protease.
  
    0.557
Plim_1383
PFAM: Methyltransferase type 12; methyltransferase small; KEGG: sfu:Sfum_0452 methyltransferase type 12.
       0.429
Plim_2626
Single-strand binding protein.
    
   0.412
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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