Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1400PFAM: domain of unknown function DUF1745; KEGG: afw:Anae109_4044 hypothetical protein. (398 aa)    
Predicted Functional Partners:
Plim_1399
TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: dol:Dole_0024 phosphodiesterase.
       0.636
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
 
      0.549
Plim_1401
Hypothetical protein.
       0.528
Plim_1263
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: scl:sce8391 WD repeat-containing protein.
  
     0.471
Plim_2401
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: sus:Acid_5038 WD-40 repeat-containing protein.
  
     0.456
Plim_2270
PFAM: protein of unknown function DUF901; KEGG: dal:Dalk_3715 protein of unknown function DUF901.
  
     0.445
Plim_1398
PFAM: glycoside hydrolase family 16; KEGG: hch:HCH_04792 beta-glucanase/beta-glucan synthetase.
       0.417
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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