STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1403PFAM: extracellular solute-binding protein family 5; KEGG: sfu:Sfum_1411 extracellular solute-binding protein, family 5. (866 aa)    
Predicted Functional Partners:
Plim_1404
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfu:Sfum_1413 binding-protein-dependent transport systems inner membrane component.
 
 0.999
Plim_1405
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfu:Sfum_1414 binding-protein-dependent transport systems inner membrane component.
 
 0.998
Plim_2226
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bba:Bd1221 ABC-type dipeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 0.986
Plim_1700
PFAM: extracellular solute-binding protein family 5.
     
  0.900
Plim_1402
KEGG: sus:Acid_7871 signal peptide peptidase SppA, 67K type; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49.
       0.465
Plim_2188
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: BRCT domain protein; Tetratricopeptide domain protein; KEGG: scl:sce3861 MerR family transcriptional regulator.
  
  
 0.440
Plim_3243
Hypothetical protein.
  
     0.432
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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