Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_1405PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfu:Sfum_1414 binding-protein-dependent transport systems inner membrane component. (542 aa)    
Predicted Functional Partners:
Plim_1404
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfu:Sfum_1413 binding-protein-dependent transport systems inner membrane component.
 0.999
Plim_2226
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bba:Bd1221 ABC-type dipeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 0.999
Plim_1403
PFAM: extracellular solute-binding protein family 5; KEGG: sfu:Sfum_1411 extracellular solute-binding protein, family 5.
 
 0.998
Plim_1700
PFAM: extracellular solute-binding protein family 5.
  
 0.989
Plim_2065
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb2093 ABC-type transport system involved in resistance to organic solvents.
 
      0.899
cysA
Sulfate ABC transporter, ATPase subunit; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
 
      0.747
lolD
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
    
 0.626
Plim_1406
TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; KEGG: CSR1; CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1); K01652 acetolactate synthase I/II/III large subunit.
     
 0.452
lolD-2
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
    
 0.451
Plim_3482
ABC transporter related protein.
 
    
 0.433
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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