Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1412PFAM: protein of unknown function DUF455; KEGG: scl:sce0972 hypothetical protein. (266 aa)    
Predicted Functional Partners:
Plim_2754
Hypothetical protein.
 
     0.777
Plim_1336
Membrane protein-like protein.
  
     0.584
Plim_1411
Hypothetical protein.
       0.524
Plim_4071
Spermine synthase.
  
     0.502
Plim_3766
Hypothetical protein.
  
     0.475
Plim_3516
Hypothetical protein.
  
     0.459
Plim_2976
KEGG: bmn:BMA10247_2126 hypothetical protein.
  
     0.437
Plim_3846
Parallel beta-helix repeat protein; KEGG: hypothetical protein LOC100134400.
  
     0.408
Plim_1410
KEGG: rce:RC1_1748 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77.
       0.404
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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