STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1438Hypothetical protein; KEGG: dol:Dole_0200 cytochrome c class I. (828 aa)    
Predicted Functional Partners:
Plim_0423
PFAM: Rieske [2Fe-2S] domain protein; KEGG: scl:sce0366 hypothetical protein.
 
 0.945
Plim_3983
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
   
 
 0.924
Plim_1439
Hypothetical protein; KEGG: rme:Rmet_0747 putative membrane-bound dehydrogenase oxidoreductase protein.
 
     0.912
Plim_0424
PFAM: Cytochrome b/b6 domain; KEGG: scl:sce0365 cytochrome b6.
  
 0.843
Plim_2090
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein.
  
 
   0.792
Plim_3984
Polysulphide reductase NrfD.
   
 
 0.760
Plim_0883
KEGG: sus:Acid_5331 hypothetical protein.
  
     0.759
Plim_3053
4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
 
 
 0.738
Plim_2953
Caa(3)-type oxidase, subunit IV.
   
 
 0.725
Plim_0250
SMART: Pyrrolo-quinoline quinone; KEGG: cps:CPS_4249 outer membrane protein assembly complex subunit YfgL.
  
     0.715
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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