STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cas1CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (598 aa)    
Predicted Functional Partners:
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
 
 0.999
Plim_3147
CRISPR-associated helicase Cas3, Anaes-subtype.
 
  
 0.889
Plim_3149
CRISPR-associated protein, GSU0053 family.
 
   
 0.845
Plim_1377
PFAM: UvrD/REP helicase; KEGG: afw:Anae109_1357 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
 
   
 0.534
Plim_0118
CRISPR-associated Csm1 family protein; KEGG: msu:MS1651 hypothetical protein.
  
  
 0.501
Plim_0054
KEGG: tgr:Tgr7_2924 histone family protein DNA- binding protein.
    
   0.418
Plim_1271
PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: DNA-binding protein Hu homolog; Belongs to the bacterial histone-like protein family.
    
   0.418
Plim_1442
PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: sus:Acid_7528 NAD-dependent epimerase/dehydratase.
       0.406
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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