STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1452PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cvi:CV_1613 3-demethylubiquinone-9 3- methyltransferase. (272 aa)    
Predicted Functional Partners:
Plim_2410
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: pla:Plav_3170 hypothetical protein.
   
 0.631
Plim_3626
Xylose isomerase domain protein TIM barrel; KEGG: similar to splicing coactivator subunit SRm300.
  
     0.600
Plim_0670
KEGG: noc:Noc_0152 secretion protein HlyD.
  
     0.522
Plim_1451
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: sus:Acid_5038 WD-40 repeat-containing protein.
  
    0.474
Plim_3326
Aldehyde Dehydrogenase.
  
 
   0.441
Plim_4190
NolW domain protein; KEGG: similar to ELKS/RAB6-interacting/CAST family member 2.
  
     0.432
Plim_3312
4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
     0.429
Plim_1512
KEGG: mxa:MXAN_5969 hypothetical protein.
   
   0.421
Plim_1514
KEGG: scl:sce6902 polyA polymerase related protein.
   
   0.421
Plim_1453
Hypothetical protein.
       0.417
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.