STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1474PFAM: Aldehyde Dehydrogenase; KEGG: xca:xccb100_1755 aldehyde dehydrogenase (NADP(+)). (527 aa)    
Predicted Functional Partners:
Plim_2320
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: scl:sce8243 fumarylacetoacetase family protein.
 
 
 0.929
Plim_0622
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase central region; dehydrogenase E1 component; KEGG: scl:sce5670 alpha-ketoglutarate decarboxylase.
   
 
 0.822
Plim_0079
PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: mca:MCA3071 isocitrate dehydrogenase, NAD- dependent, putative.
   
 0.813
Plim_2713
4-hydroxyproline epimerase; Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). Is likely involved in a degradation pathway that converts t4LHyp to alpha-ketoglutarate. Displays no proline racemase activity.
 
 
   0.744
Plim_3032
FAD dependent oxidoreductase; KEGG: proteophosphoglycan 5.
  
    0.681
Plim_2712
FAD dependent oxidoreductase.
  
    0.668
Plim_3677
Aldehyde Dehydrogenase.
  
     0.619
Plim_2714
Dihydrodipicolinate synthetase; Belongs to the DapA family.
  
    0.594
Plim_1475
PFAM: protein of unknown function DUF81; KEGG: sus:Acid_5931 hypothetical protein.
 
     0.520
Plim_2741
Aldehyde Dehydrogenase.
  
     0.513
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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