Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_1480PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE- like protein. (362 aa)    
Predicted Functional Partners:
Plim_0076
TIGRFAM: type IV pilus assembly protein PilM; KEGG: afw:Anae109_0686 type IV pilus assembly protein PilM.
  
     0.641
Plim_3351
Hypothetical protein.
  
     0.574
Plim_1481
PFAM: glycosyl transferase family 2; KEGG: sus:Acid_1399 glycosyl transferase family protein.
       0.539
Plim_1482
Phosphomannose isomerase-like protein; KEGG: bsu:BSU12020 mannose-6-phosphate isomerase.
       0.539
Plim_1478
PFAM: glycosyl transferase family 2; KEGG: acp:A2cp1_0705 glycosyl transferase family 2.
       0.527
Plim_1479
Hypothetical protein.
       0.527
Plim_0641
KEGG: SNF2 superfamily protein; Belongs to the bacterial secretin family.
  
    0.404
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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