Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_1491PAS sensor protein; KEGG: pca:Pcar_0654 two-component sensor histidine kinase PhoR; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein. (584 aa)    
Predicted Functional Partners:
Plim_2180
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: wpi:WPa_0358 response regulator/GGDEF domain protein.
 0.997
Plim_1485
PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sfu:Sfum_2892 two component transcriptional regulator, winged helix family.
 0.988
Plim_3821
Response regulator receiver.
 0.982
Plim_0428
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: rce:RC1_0993 transcriptional regulatory protein YycF.
 
  
 0.976
Plim_0429
ATP-binding region ATPase domain protein; KEGG: glo:Glov_0589 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
 
 
0.941
Plim_3822
ATP-binding region ATPase domain protein.
 
 
0.941
Plim_2762
PAS sensor protein.
 
 
0.920
Plim_0812
PFAM: Stage II sporulation E family protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; KEGG: dal:Dalk_0898 putative PAS/PAC sensor protein.
    
 0.914
Plim_3367
Response regulator receiver.
 
 
 
 0.833
Plim_2264
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: mlo:mlr6691 two-component response regulator.
 
 
 0.815
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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