Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1513PFAM: protein of unknown function DUF549; KEGG: hypothetical protein. (258 aa)    
Predicted Functional Partners:
Plim_1512
KEGG: mxa:MXAN_5969 hypothetical protein.
     0.980
Plim_1514
KEGG: scl:sce6902 polyA polymerase related protein.
 
     0.939
Plim_1515
PFAM: Silent information regulator protein Sir2; KEGG: pfl:PFL_2453 NAD-dependent deacetylase.
       0.773
Plim_2530
PFAM: Ankyrin; SMART: Ankyrin; KEGG: hypothetical protein.
  
 
  0.736
Plim_1511
Hypothetical protein.
       0.551
Plim_2043
PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: bpy:Bphyt_0018 RNA-directed DNA polymerase (reverse transcriptase).
  
     0.520
Plim_3377
Appr-1-p processing domain protein.
  
     0.500
Plim_2966
Peptidase U32; KEGG: proteophosphoglycan 5.
  
     0.478
Plim_1570
KEGG: hch:HCH_05019 hypothetical protein.
  
     0.457
Plim_3628
FG-GAP repeat protein.
  
     0.448
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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