STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1525PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_6289 hypothetical protein. (487 aa)    
Predicted Functional Partners:
Plim_1526
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_6547 hypothetical protein.
 
     0.909
Plim_0378
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: pat:Patl_0815 hypothetical protein.
  
     0.775
Plim_0517
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_6290 hypothetical protein.
  
     0.775
Plim_0775
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_6186 hypothetical protein.
  
     0.775
Plim_1739
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_1145 hypothetical protein.
  
     0.775
Plim_1796
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_0974 hypothetical protein.
  
     0.775
Plim_2165
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_4059 hypothetical protein.
  
     0.775
Plim_2950
Protein of unknown function DUF1549.
  
     0.775
Plim_3229
Protein of unknown function DUF1549.
  
     0.775
Plim_3816
Protein of unknown function DUF1549.
  
     0.775
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.