STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1564TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: gsu:GSU0193 L-sorbosone dehydrogenase, putative. (1193 aa)    
Predicted Functional Partners:
Plim_1785
PFAM: FG-GAP repeat protein; KEGG: sus:Acid_7682 FG-GAP repeat-containing protein.
 
     0.859
Plim_1580
Large, multifunctional secreted protein.
  
     0.766
Plim_1439
Hypothetical protein; KEGG: rme:Rmet_0747 putative membrane-bound dehydrogenase oxidoreductase protein.
  
     0.763
Plim_0018
PFAM: protein of unknown function DUF1080; KEGG: swd:Swoo_0366 hypothetical protein.
  
     0.759
Plim_3929
FG-GAP repeat protein.
  
     0.752
Plim_2663
Hypothetical protein; KEGG: MUC2; mucin 2, oligomeric mucus/gel-forming; K10955 intestinal mucin-2.
  
     0.738
Plim_1602
KEGG: dal:Dalk_2288 YD repeat protein.
  
     0.730
Plim_1600
KEGG: dal:Dalk_2288 YD repeat protein.
  
     0.727
Plim_1975
KEGG: sus:Acid_1705 signal peptide and transmembrane prediction.
  
     0.727
Plim_1036
AmoP; SMART: AMOP; KEGG: dal:Dalk_2288 YD repeat protein.
  
     0.726
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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