Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_1569PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sde:Sde_0292 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (247 aa)    
Predicted Functional Partners:
Plim_2034
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: oan:Oant_0571 3-oxoacyl-(acyl-carrier- protein) reductase.
  
 
   0.760
Plim_1674
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: lpp:lpp0423 enoyl-(acyl carrier protein) reductase.
  
 
   0.739
Plim_3181
Short-chain dehydrogenase/reductase SDR.
  
 
   0.733
Plim_1144
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr5634 putative 3-oxoacyl-[acyl-carrier- protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.632
Plim_0880
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hypothetical protein.
  
 
   0.611
Plim_2099
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bha:BH1067 D-mannonate oxidoreductase.
  
 
   0.593
Plim_1570
KEGG: hch:HCH_05019 hypothetical protein.
       0.592
Plim_1577
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xca:xccb100_0765 3-oxoacyl-[acyl-carrier- protein] reductase.
  
 
   0.581
murD
UDP-N-acetylmuramoylalanine/D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
       0.516
Plim_2369
PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; KEGG: aba:Acid345_4052 2-acyl-glycerophospho- ethanolamine acyltransferase.
   
 
 0.505
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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