Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
Experiments
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[Homology]
Score
Plim_1570KEGG: hch:HCH_05019 hypothetical protein. (213 aa)    
Predicted Functional Partners:
Plim_2199
PFAM: conserved hypothetical protein; KEGG: pag:PLES_49631 hypothetical protein.
 
     0.764
Plim_3377
Appr-1-p processing domain protein.
 
     0.727
Plim_0508
TIGRFAM: RNA ligase, DRB0094 family; KEGG: hypothetical protein.
  
     0.689
murD
UDP-N-acetylmuramoylalanine/D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
       0.668
Plim_3935
Glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.610
Plim_1569
PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sde:Sde_0292 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.592
Plim_1514
KEGG: scl:sce6902 polyA polymerase related protein.
  
     0.515
Plim_1512
KEGG: mxa:MXAN_5969 hypothetical protein.
  
     0.493
Plim_1513
PFAM: protein of unknown function DUF549; KEGG: hypothetical protein.
  
     0.457
Plim_0035
PFAM: N-formylglutamate amidohydrolase; KEGG: hypothetical gene supported by CR386744.
  
     0.426
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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