STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1602KEGG: dal:Dalk_2288 YD repeat protein. (753 aa)    
Predicted Functional Partners:
Plim_1601
Hypothetical protein.
       0.773
Plim_3330
Major facilitator superfamily MFS_1.
  
     0.764
Plim_0143
KEGG: oca:OCAR_5635 hypothetical protein.
  
     0.754
Plim_4033
Pyrrolo-quinoline quinone.
  
     0.749
Plim_1564
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: gsu:GSU0193 L-sorbosone dehydrogenase, putative.
  
     0.730
Plim_0623
PFAM: beta-lactamase domain protein; KEGG: sus:Acid_5491 beta-lactamase domain- containing protein.
  
     0.725
Plim_2944
Pyrrolo-quinoline quinone.
  
     0.709
Plim_1413
PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: acr:Acry_0452 major facilitator transporter.
  
     0.708
Plim_1153
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: sus:Acid_3123 putative heme-binding protein.
  
     0.685
Plim_0926
KEGG: hypothetical protein.
  
 
   0.668
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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