STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1607PFAM: aminotransferase class V; KEGG: scl:sce8130 selenocysteine lyase / isopenicillin N epimerase. (399 aa)    
Predicted Functional Partners:
Plim_1321
PFAM: nitrogen-fixing NifU domain protein; KEGG: pin:Ping_1504 SUF system FeS assembly protein, NifU family protein.
 
 
 0.966
Plim_2389
KEGG: bcy:Bcer98_3579 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.934
Plim_2391
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: bha:BH3470 hypothetical protein.
 
 
 0.906
Plim_2390
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bcy:Bcer98_3575 FeS assembly protein SufB.
 
 
 0.902
Plim_0233
PFAM: Fe-S metabolism associated SufE; KEGG: atc:AGR_C_1673 hypothetical 15.6 kDa protein in MucR 3'region (orf5).
  
 
 0.788
Plim_1608
KEGG: sus:Acid_7816 hypothetical protein.
       0.476
Plim_2392
PFAM: protein of unknown function DUF59; Rieske [2Fe-2S] domain protein; KEGG: oca:OCAR_4240 NifU protein.
 
  
 0.452
Plim_1606
Hypothetical protein.
       0.410
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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