Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1608KEGG: sus:Acid_7816 hypothetical protein. (407 aa)    
Predicted Functional Partners:
Plim_1610
KEGG: rde:RD1_3874 hypothetical protein.
 
     0.861
Plim_1621
KEGG: psp:PSPPH_3238 hypothetical protein.
 
  
 0.775
Plim_1785
PFAM: FG-GAP repeat protein; KEGG: sus:Acid_7682 FG-GAP repeat-containing protein.
  
     0.729
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
   
 
 0.727
Plim_2489
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sus:Acid_7741 oxidoreductase domain- containing protein.
  
     0.704
Plim_1121
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_3745 hypothetical protein.
  
     0.702
Plim_1975
KEGG: sus:Acid_1705 signal peptide and transmembrane prediction.
  
     0.645
Plim_3308
Heme-binding protein.
  
     0.645
Plim_0627
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.
  
     0.633
Plim_1723
TIGRFAM: heme-binding protein; KEGG: mrd:Mrad2831_3094 glucose/sorbosone dehydrogenase-like protein.
  
     0.599
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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