STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1609PFAM: protein of unknown function DUF820; KEGG: scl:sce6780 hypothetical protein. (199 aa)    
Predicted Functional Partners:
Plim_0322
PFAM: protein of unknown function DUF820.
  
     0.753
Plim_1610
KEGG: rde:RD1_3874 hypothetical protein.
       0.625
Plim_2398
KEGG: mpt:Mpe_A2083 hypothetical protein.
  
     0.530
Plim_2029
Hypothetical protein; KEGG: bca:BCE_A0190 cytochrome c biogenesis protein, putative.
  
     0.525
Plim_2530
PFAM: Ankyrin; SMART: Ankyrin; KEGG: hypothetical protein.
  
     0.510
Plim_3168
Spore coat protein CotH; KEGG: hypothetical protein.
  
     0.496
Plim_2128
Bacteriophage capsid protein-like protein; KEGG: xfa:XF0510 hypothetical protein.
  
     0.486
Plim_2131
KEGG: nme:NMB1094 hypothetical protein.
  
     0.481
Plim_3929
FG-GAP repeat protein.
  
     0.477
Plim_1608
KEGG: sus:Acid_7816 hypothetical protein.
       0.471
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.