Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1621KEGG: psp:PSPPH_3238 hypothetical protein. (395 aa)    
Predicted Functional Partners:
Plim_1608
KEGG: sus:Acid_7816 hypothetical protein.
 
  
 0.775
Plim_2730
Glucosamine/galactosamine-6-phosphate isomerase.
 
   
 0.534
Plim_3420
Carbohydrate kinase FGGY.
 
  
 0.495
Plim_1666
PFAM: isochorismatase hydrolase; KEGG: sus:Acid_1892 isochorismatase hydrolase.
  
     0.493
Plim_1011
Hypothetical protein; KEGG: hne:HNE_2881 alpha/beta fold family hydrolase.
  
     0.490
Plim_0627
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.
  
     0.482
Plim_1971
KEGG: sus:Acid_4361 galactose-1-phosphate uridylyltransferase.
  
 
 0.468
Plim_0336
Hypothetical protein; KEGG: sat:SYN_00815 dolichyl-phosphate-mannose- protein mannosyltransferase proteins.
  
     0.451
Plim_1622
PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_1110 glycosyl transferase family 2.
       0.441
Plim_3227
Inosine/uridine-preferring nucleoside hydrolase.
  
     0.436
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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