Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Plim_1629PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: fibrocystin-L-like protein. (656 aa)    
Predicted Functional Partners:
Plim_4190
NolW domain protein; KEGG: similar to ELKS/RAB6-interacting/CAST family member 2.
  
    0.742
Plim_0143
KEGG: oca:OCAR_5635 hypothetical protein.
  
     0.732
Plim_1736
PFAM: Calcium/calmodulin dependent protein kinase II association-domain protein; KEGG: hypothetical protein.
  
     0.650
Plim_2836
KEGG: hypothetical protein LOC714502.
  
     0.646
Plim_0937
PFAM: YTV domain protein; KEGG: hypothetical protein LOC680468.
  
     0.642
Plim_2082
KEGG: Hypothetical protein CBG02561.
  
     0.614
Plim_1805
Hypothetical protein.
  
     0.611
Plim_2201
KEGG: bja:blr0521 hypothetical protein.
  
     0.599
Plim_3408
KEGG: azo:azo2666 hypothetical protein.
  
     0.594
Plim_3319
Similar to plant photosystem II stability/assembly factor.
  
     0.581
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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