STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1645PFAM: RbsD or FucU transport; KEGG: pat:Patl_3642 RbsD or FucU transport; Belongs to the RbsD / FucU family. (148 aa)    
Predicted Functional Partners:
Plim_1644
PFAM: aldo/keto reductase; KEGG: Os12g0482700; hypothetical protein.
 
     0.769
Plim_3420
Carbohydrate kinase FGGY.
 
  
 0.706
Plim_1725
KEGG: hypothetical protein.
  
     0.554
Plim_0655
PFAM: Pericardin like; KEGG: GI11778 gene product from transcript GI11778- RA.
  
     0.523
Plim_1581
PFAM: PA14 domain protein; SMART: PA14 domain protein; KEGG: rde:RD1_3724 hypothetical protein.
  
     0.520
Plim_1646
PFAM: protein of unknown function DUF188; KEGG: ppd:Ppro_3544 hypothetical protein; Belongs to the UPF0178 family.
       0.517
Plim_1251
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sme:SMa1353 putative epimerase.
 
     0.499
Plim_1747
PFAM: class II aldolase/adducin family protein; KEGG: sus:Acid_1334 class II aldolase/adducin family protein.
  
  
 0.419
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.