Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_1682PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_4909 xylose isomerase domain- containing protein. (287 aa)    
Predicted Functional Partners:
Plim_1798
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pmy:Pmen_3195 hydroxypyruvate isomerase.
  
     0.741
Plim_3626
Xylose isomerase domain protein TIM barrel; KEGG: similar to splicing coactivator subunit SRm300.
  
     0.643
Plim_3402
Xylose isomerase domain protein TIM barrel.
  
     0.567
Plim_0090
Conserved hypothetical protein; KEGG: outer membrane efflux protein.
  
     0.565
Plim_3122
Phosphopantetheine-binding protein.
  
    0.527
Plim_3249
Hypothetical protein.
  
     0.507
Plim_2156
KEGG: sus:Acid_4453 transmembrane prediction; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.490
Plim_1681
PFAM: protein of unknown function DUF481; KEGG: swp:swp_1939 hypothetical protein.
       0.456
Plim_1683
Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
    0.455
Plim_2805
Outer membrane efflux protein.
  
     0.453
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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