STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1692KEGG: gsu:GSU3036 flagellar protein FliS. (166 aa)    
Predicted Functional Partners:
Plim_2146
PFAM: Anti-sigma-28 factor FlgM family protein.
  
 
 0.989
flhA
Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
  
 
 0.988
Plim_2711
Flagellar hook-associated protein 3.
  
 
 0.985
Plim_3359
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
 
 0.985
flgK
Flagellar hook-associated protein FlgK.
  
 
 0.975
Plim_1693
PFAM: flagellar hook-associated 2 domain protein; flagellar hook-associated protein 2 domain protein; KEGG: dol:Dole_0612 hemolysin-type calcium-binding region.
  
 
 0.971
Plim_3682
Flagellar basal body FlaE domain protein.
  
 
 0.968
Plim_1906
PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; response regulator receiver; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; response regulator receiver; KEGG: rce:RC1_1758 chemotaxis protein CheA.
  
  
 0.965
Plim_3098
ATPase, FliI/YscN family.
  
 
 0.956
Plim_3955
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
  
  
 0.945
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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