STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1696PFAM: MotA/TolQ/ExbB proton channel; KEGG: bpt:Bpet2669 biopolymer transport protein. (235 aa)    
Predicted Functional Partners:
Plim_1698
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: amc:MADE_02811 biopolymer transport protein.
 
 
 0.935
Plim_1697
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aeh:Mlg_1435 biopolymer transport protein ExbD/TolR.
 
   0.912
Plim_1460
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: biopolymer transport protein ExbD/TolR.
  
 
 0.823
Plim_1700
PFAM: extracellular solute-binding protein family 5.
       0.795
Plim_1699
Hypothetical protein; KEGG: mxa:MXAN_4020 sigma-54 dependent transcriptional regulator, fis family.
       0.789
Plim_1701
Hypothetical protein.
       0.774
Plim_3762
MotA/TolQ/ExbB proton channel.
  
     0.754
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
     
 0.554
Plim_3132
Biopolymer transport protein ExbD/TolR.
  
   0.514
Plim_1703
PFAM: protein of unknown function UPF0047; KEGG: eca:ECA3688 hypothetical protein.
       0.484
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.