STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1697PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aeh:Mlg_1435 biopolymer transport protein ExbD/TolR. (173 aa)    
Predicted Functional Partners:
Plim_1696
PFAM: MotA/TolQ/ExbB proton channel; KEGG: bpt:Bpet2669 biopolymer transport protein.
 
   0.912
Plim_1698
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: amc:MADE_02811 biopolymer transport protein.
 
     0.862
Plim_1700
PFAM: extracellular solute-binding protein family 5.
       0.806
Plim_1699
Hypothetical protein; KEGG: mxa:MXAN_4020 sigma-54 dependent transcriptional regulator, fis family.
       0.792
Plim_1701
Hypothetical protein.
       0.777
Plim_3586
Tetratricopeptide TPR_2 repeat protein.
 
  
 0.683
Plim_2435
PFAM: protein of unknown function DUF1573; KEGG: gur:Gura_3399 hypothetical protein.
  
     0.667
Plim_4206
Xylose isomerase domain protein TIM barrel.
  
     0.654
Plim_2203
KEGG: dal:Dalk_1262 ABC-type uncharacterized transport system involved in gliding motility, auxiliary component.
  
     0.648
Plim_1459
KEGG: Hypothetical protein CBG02561.
  
     0.640
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.