Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Plim_1703PFAM: protein of unknown function UPF0047; KEGG: eca:ECA3688 hypothetical protein. (140 aa)    
Predicted Functional Partners:
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
       0.687
Plim_1704
PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: vco:VC0395_0877 stress responsive A/B barrel domain superfamily.
       0.598
Plim_1696
PFAM: MotA/TolQ/ExbB proton channel; KEGG: bpt:Bpet2669 biopolymer transport protein.
       0.484
Plim_1697
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aeh:Mlg_1435 biopolymer transport protein ExbD/TolR.
       0.484
Plim_1698
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: amc:MADE_02811 biopolymer transport protein.
       0.484
Plim_1699
Hypothetical protein; KEGG: mxa:MXAN_4020 sigma-54 dependent transcriptional regulator, fis family.
       0.484
Plim_1700
PFAM: extracellular solute-binding protein family 5.
       0.484
Plim_1701
Hypothetical protein.
       0.484
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
 
      0.473
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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