Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1705Hypothetical protein; KEGG: sfu:Sfum_1622 40-residue YVTN family beta- propeller repeat protein. (634 aa)    
Predicted Functional Partners:
Plim_0926
KEGG: hypothetical protein.
  
     0.611
Plim_1416
PFAM: protein of unknown function DUF1355; KEGG: ank:AnaeK_2645 protein of unknown function DUF1355.
  
     0.571
Plim_3772
Conserved hypothetical protein.
  
   0.571
Plim_3243
Hypothetical protein.
  
     0.512
Plim_1706
Hypothetical protein.
       0.511
Plim_3001
Von Willebrand factor type A.
  
     0.509
Plim_0744
Putative secreted protein; KEGG: sus:Acid_2373 calcium-binding EF-hand- containing protein.
 
  
 0.489
Plim_3983
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
     
 0.477
Plim_0026
PFAM: Di-haem cytochrome c peroxidase; KEGG: pfl:PFL_3613 di-haem cytochrome c peroxidase family protein.
  
   0.473
Plim_1011
Hypothetical protein; KEGG: hne:HNE_2881 alpha/beta fold family hydrolase.
  
     0.470
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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