STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1727PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein. (565 aa)    
Predicted Functional Partners:
Plim_1728
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_3761 hypothetical protein.
 
     0.882
Plim_1738
PFAM: protein of unknown function DUF1501; KEGG: azo:azo2345 hypothetical protein.
  
     0.774
Plim_1795
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_6548 hypothetical protein.
  
     0.774
Plim_1889
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_1146 hypothetical protein.
  
     0.774
Plim_2164
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_4060 hypothetical protein.
  
     0.774
Plim_3972
Protein of unknown function DUF1501.
  
     0.774
Plim_0335
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_6548 hypothetical protein.
  
     0.773
Plim_2793
Protein of unknown function DUF1501.
  
     0.773
Plim_2948
Protein of unknown function DUF1501.
  
     0.773
Plim_3817
Protein of unknown function DUF1501.
  
     0.773
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.