STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1756PFAM: microcompartments protein; KEGG: ecz:ECS88_4677 putative propanediol utilization protein, polyhedral bodies (PduA-like). (96 aa)    
Predicted Functional Partners:
Plim_1753
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: ecz:ECS88_4681 putative ethanolamine utilization protein (EutN-like).
 
 
 
 0.959
Plim_1750
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: sus:Acid_0324 ethanolamine utilization protein EutN/carboxysome structural protein CcmL.
 
 
 
 0.910
Plim_1757
PFAM: Propanediol utilization protein; KEGG: sus:Acid_1330 propanediol utilization protein.
 
  
 0.890
Plim_1751
PFAM: Aldehyde Dehydrogenase; KEGG: sus:Acid_1333 aldehyde dehydrogenase.
 
   
 0.813
Plim_1748
Hypothetical protein; KEGG: sus:Acid_0323 ethanolamine utilization protein EutN/carboxysome structural protein CcmL.
   
 
 0.782
Plim_1755
PFAM: microcompartments protein; KEGG: dal:Dalk_5001 microcompartments protein.
 
    
0.579
Plim_1758
PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: nar:Saro_1048 DeoR family transcriptional regulator.
       0.545
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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