STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1781KEGG: pat:Patl_4270 putative Zn-dependent aminopeptidase. (838 aa)    
Predicted Functional Partners:
Plim_3899
Peptidase M28.
 
 
 0.687
Plim_2538
PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: ilo:IL2328 dipeptidyl aminopeptidase.
  
     0.642
Plim_2026
Toxin secretion ABC transporter ATP-binding protein; KEGG: mfa:Mfla_2223 ABC transporter related.
 
     0.619
Plim_3912
Peptidase S9 prolyl oligopeptidase active site domain protein.
  
     0.603
Plim_1012
PFAM: peptidase T2 asparaginase 2; KEGG: smt:Smal_0741 peptidase T2 asparaginase 2.
  
     0.577
Plim_2027
KEGG: mfa:Mfla_2222 secretion protein HlyD.
  
     0.558
Plim_0588
Prolyl oligopeptidase; PFAM: protein of unknown function DUF885; peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta- propeller; KEGG: aba:Acid345_0615 Prolyl oligopeptidase. Serine peptidase. MEROPS family S09A.
 
   
 0.537
Plim_0475
TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: wbm:Wbm0344 elongation factor G.
   
 
 0.530
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
   
 
 0.530
Plim_0862
PFAM: peptidase M28; KEGG: afw:Anae109_2846 peptidase M28.
 
 
 
 0.527
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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