Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_1793PFAM: glycosyl transferase group 1; KEGG: rme:Rmet_2719 glycosyl transferase, group 1. (388 aa)    
Predicted Functional Partners:
Plim_1056
PFAM: glycosyl transferase group 1; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: acp:A2cp1_4300 phosphatidylinositol alpha- mannosyltransferase.
  
     0.737
Plim_1055
PFAM: glycosyl transferase family 2; Methyltransferase type 12; Methyltransferase type 11; TPR repeat-containing protein; Methionine biosynthesis MetW protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3740 glycosyl transferase family 2.
  
 
 0.539
queA
S-adenosylmethionine/tRNA-ribosyltransferase- isom erase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
  
    0.514
Plim_0635
PFAM: glycosyl transferase group 1; KEGG: sat:SYN_02667 alpha-D-QuiNAc alpha-1,3- galactosyltransferase.
 
    
0.499
Plim_2615
Asparagine synthase (glutamine-hydrolyzing).
  
     0.439
mraZ
PFAM: protein of unknown function UPF0040; KEGG: bha:BH2576 cell division protein MraZ; Belongs to the MraZ family.
       0.438
Plim_4167
Polysaccharide biosynthesis protein CapD.
 
  
 0.405
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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