STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1797PFAM: Myo-inositol-1-phosphate synthase GAPDH domain protein; Myo-inositol-1-phosphate synthase; KEGG: sfu:Sfum_1982 inositol-3-phosphate synthase. (406 aa)    
Predicted Functional Partners:
Plim_1820
PFAM: inositol monophosphatase; KEGG: sus:Acid_5909 inositol-phosphate phosphatase.
   
 
 0.913
Plim_1409
TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: mxa:MXAN_4888 phosphoglucomutase.
     
 0.908
Plim_1388
PFAM: ROK family protein; KEGG: bcr:BCAH187_A4396 glucokinase.
     
  0.900
Plim_2404
PFAM: ROK family protein; KEGG: ftn:FTN_0618 ROK family protein.
     
  0.900
Plim_3603
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I.
     
  0.900
Plim_3316
Xylose isomerase domain protein TIM barrel.
 
     0.773
purH
KEGG: maq:Maqu_3450 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region.
    
   0.716
Plim_2631
UbiA prenyltransferase.
 
     0.702
Plim_1148
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: pfl:PFL_5545 type I phosphodiesterase/nucleotide pyrophosphatase family protein.
 
     0.695
Plim_1549
PFAM: TatD-related deoxyribonuclease; KEGG: cvi:CV_2836 hypothetical protein.
 
     0.680
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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