Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1804KEGG: sus:Acid_6438 hypothetical protein. (878 aa)    
Predicted Functional Partners:
Plim_1803
TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1550; KEGG: afw:Anae109_4420 hypothetical protein.
 
     0.956
Plim_1805
Hypothetical protein.
 
     0.923
Plim_1806
Hypothetical protein; KEGG: sushi-domain containing secreted protein; with a signal peptide, low complexity region followed by a sushi domain.
 
     0.851
Plim_1802
PFAM: protein of unknown function DUF58; SMART: von Willebrand factor type A; KEGG: mxa:MXAN_6611 hypothetical protein.
 
     0.790
Plim_2313
KEGG: mxa:MXAN_5863 hypothetical protein.
  
     0.774
Plim_2312
TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1550; KEGG: afw:Anae109_4420 hypothetical protein.
  
     0.771
Plim_2314
Hypothetical protein; KEGG: GA28568 gene product from transcript GA28568- RA.
  
     0.770
Plim_0306
PFAM: A-macroglobulin complement component; KEGG: mxa:MXAN_5864 hypothetical protein.
 
     0.766
Plim_1459
KEGG: Hypothetical protein CBG02561.
  
     0.757
Plim_2201
KEGG: bja:blr0521 hypothetical protein.
  
     0.739
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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