Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Plim_1809PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: protease Do precursor. (630 aa)    
Predicted Functional Partners:
Plim_1810
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: nma:NMA0710 putative periplasmic serine protease.
 
    
0.870
Plim_1808
PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; KEGG: slo:Shew_2289 glycosy hydrolase family protein.
       0.813
Plim_1010
Trypsin-like protein serine protease typically periplasmic containing C-terminal PDZ domain; KEGG: HTRA2; HtrA serine peptidase 2; K08669 HtrA serine peptidase 2.
  
     0.745
Plim_1811
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: mxa:MXAN_4330 periplasmic serine protease, DO/DeqQ family.
 
    
0.736
Plim_1806
Hypothetical protein; KEGG: sushi-domain containing secreted protein; with a signal peptide, low complexity region followed by a sushi domain.
 
     0.728
Plim_1805
Hypothetical protein.
 
    0.592
Plim_1807
Hypothetical protein; KEGG: GA27436 gene product from transcript GA27436- RA.
       0.592
Plim_2762
PAS sensor protein.
  
  
 0.461
Plim_2519
PFAM: AAA ATPase central domain protein; KEGG: AAA family ATPase, putative.
    
  0.438
Plim_2915
Protein of unknown function DUF116.
 
     0.425
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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