STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1856Hypothetical protein; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE- like protein. (301 aa)    
Predicted Functional Partners:
Plim_0675
SMART: Tetratricopeptide domain protein; KEGG: SLEI family protein.
  
     0.644
Plim_4112
Polysaccharide export protein; KEGG: hypothetical protein.
  
     0.637
Plim_1668
KEGG: ade:Adeh_2066 hypothetical protein.
  
     0.636
Plim_0154
SMART: HTTM domain protein; KEGG: bba:Bd2937 hypothetical protein.
  
     0.627
Plim_2370
KEGG: sus:Acid_5886 outer membrane efflux protein.
  
     0.564
Plim_1855
Hypothetical protein.
       0.542
Plim_1987
KEGG: sus:Acid_5332 hypothetical protein.
  
     0.512
Plim_0076
TIGRFAM: type IV pilus assembly protein PilM; KEGG: afw:Anae109_0686 type IV pilus assembly protein PilM.
  
     0.485
Plim_0259
Hypothetical protein; KEGG: acp:A2cp1_0259 tetratricopeptide TPR_2 repeat protein.
  
     0.485
Plim_2131
KEGG: nme:NMB1094 hypothetical protein.
  
     0.463
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.