STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1859SMART: AAA ATPase; KEGG: sat:SYN_00569 ATPase protein with chaperone activity. (519 aa)    
Predicted Functional Partners:
Plim_1916
PFAM: type II secretion system protein; KEGG: rso:RSc0650 putative tight adherence TadC- related transmembrane protein.
 
    0.723
Plim_1813
PFAM: type II secretion system protein; KEGG: sat:SYN_01499 flp pilus assembly protein.
 
    0.707
Plim_1917
PFAM: type II secretion system protein; KEGG: pca:Pcar_1753 Flp pilus assembly protein TadB.
 
    0.666
Plim_0793
PFAM: response regulator receiver; KEGG: ppd:Ppro_2701 response regulator receiver protein.
 
    0.591
Plim_1860
Hypothetical protein.
       0.572
Plim_0794
PFAM: type II and III secretion system protein; KEGG: dvl:Dvul_1112 type II and III secretion system protein; Belongs to the bacterial secretin family.
 
     0.565
Plim_1814
PFAM: type II secretion system protein; KEGG: rso:RSc0651 putative tight adherence TadB- related transmembrane protein.
 
    0.559
Plim_1858
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: predicted protein.
       0.501
Plim_1918
PFAM: type II secretion system protein E; KEGG: ppd:Ppro_2700 type II secretion system protein E.
 
     0.491
Plim_3839
Type II and III secretion system protein; Belongs to the bacterial secretin family.
 
     0.483
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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