STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1867Hypothetical protein; KEGG: lch:Lcho_1179 cellulose biosynthesis protein CelD. (393 aa)    
Predicted Functional Partners:
Plim_1842
KEGG: pla:Plav_2998 transcription factor jumonji/aspartyl beta-hydroxylase.
 
     0.771
Plim_0677
PFAM: polysaccharide deacetylase; KEGG: cps:CPS_5022 polysaccharide deacetylase family protein.
 
     0.525
Plim_1868
PFAM: Aldehyde Dehydrogenase; KEGG: noc:Noc_2605 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.476
Plim_1866
Hypothetical protein.
       0.434
Plim_0743
KEGG: atc:AGR_C_4472 hypothetical protein.
  
     0.411
Plim_3612
Phage terminase-like protein protein large subunit-like protein.
  
     0.409
Plim_3529
Malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
  
     0.408
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.