STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1876TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: eta:ETA_28360 probable RNA polymerase ECF- type sigma factor. (174 aa)    
Predicted Functional Partners:
Plim_1877
Hypothetical protein.
       0.773
Plim_1878
Hypothetical protein; KEGG: pat:Patl_0638 peptidase S8 and S53, subtilisin, kexin, sedolisin.
       0.773
Plim_1880
PFAM: PEBP family protein; KEGG: hypothetical protein.
 
     0.736
Plim_0777
Hypothetical protein; KEGG: sus:Acid_1077 alpha/beta hydrolase domain- containing protein.
  
     0.640
Plim_1879
PFAM: sulfatase; KEGG: pat:Patl_0881 sulfatase.
       0.628
Plim_1881
PFAM: sulfatase; type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: cps:CPS_2364 sulfatase family protein.
       0.512
Plim_1882
Hypothetical protein.
       0.490
Plim_1874
PFAM: Osmosensitive K channel His kinase sensor; ATP-binding region ATPase domain protein; UspA domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mca:MCA2214 sensor histidine kinase KdpD.
       0.417
Plim_1875
PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: scl:sce1356 two component system transcriptional regulatory protein.
       0.417
kdpC
Potassium-transporting ATPase, C subunit; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.
       0.415
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.