STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1882Hypothetical protein. (90 aa)    
Predicted Functional Partners:
Plim_1880
PFAM: PEBP family protein; KEGG: hypothetical protein.
       0.737
Plim_1881
PFAM: sulfatase; type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: cps:CPS_2364 sulfatase family protein.
       0.737
Plim_1879
PFAM: sulfatase; KEGG: pat:Patl_0881 sulfatase.
       0.595
Plim_1876
TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: eta:ETA_28360 probable RNA polymerase ECF- type sigma factor.
       0.490
Plim_1877
Hypothetical protein.
       0.490
Plim_1878
Hypothetical protein; KEGG: pat:Patl_0638 peptidase S8 and S53, subtilisin, kexin, sedolisin.
       0.490
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.