STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1902KEGG: cak:Caul_2985 hypothetical protein. (413 aa)    
Predicted Functional Partners:
Plim_0101
TIGRFAM: FAD dependent oxidoreductase TIGR03364; PFAM: FAD dependent oxidoreductase; KEGG: pfl:PFL_5887 hypothetical protein.
 
     0.777
Plim_1903
TIGRFAM: phosphonate catabolism associated alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: similar to predicted protein.
 
     0.676
Plim_3114
Hypothetical protein; KEGG: bpm:BURPS1710b_A2370 200 kDa antigen p200, putative.
  
     0.571
Plim_3627
Phosphonoacetaldehyde hydrolase; Involved in phosphonate degradation.
 
     0.547
Plim_0646
SMART: metal-dependent phosphohydrolase HD region; KEGG: bte:BTH_II2048 hypothetical protein.
 
     0.528
Plim_0029
KEGG: sus:Acid_3123 putative heme-binding protein; TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.
  
     0.490
Plim_1781
KEGG: pat:Patl_4270 putative Zn-dependent aminopeptidase.
  
     0.410
Plim_1901
PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: mxa:MXAN_0076 Appr-1-p processing enzyme family domain protein.
       0.408
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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