Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_1904KEGG: aba:Acid345_1740 squalene cyclase; TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; PFAM: Prenyltransferase/squalene oxidase. (705 aa)    
Predicted Functional Partners:
Plim_0903
Squalene cyclase-like protein; KEGG: squalene-hopene-cyclase, putative; K06045 squalene-hopene cyclase.
  
  
 
0.929
Plim_3361
Hopanoid biosynthesis associated radical SAM protein HpnH.
   
 0.907
Plim_4048
Cycloartenol synthase-like protein.
     
  0.900
Plim_3348
Hopanoid biosynthesis associated RND transporter like protein HpnN.
 
     0.759
Plim_1743
PFAM: purine or other phosphorylase family 1; KEGG: noc:Noc_1319 purine phosphorylase family protein 1.
 
   
 0.705
Plim_3204
Squalene-associated FAD-dependent desaturase.
 
   
 0.675
Plim_2245
TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: aba:Acid345_1745 squalene/phytoene synthase.
 
  
 0.496
Plim_2244
PFAM: Squalene/phytoene synthase; KEGG: sus:Acid_1266 farnesyl-diphosphate farnesyltransferase.
 
  
 0.478
Plim_0386
PFAM: protein of unknown function DUF1597; KEGG: mca:MCA2112 hypothetical protein.
  
     0.434
Plim_3071
Transposase IS4 family protein.
  
     0.413
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.