Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_1924Pectin acetylesterase; KEGG: sus:Acid_1173 alpha/beta hydrolase. (319 aa)    
Predicted Functional Partners:
Plim_2636
Sialate O-acetylesterase.
  
     0.704
Plim_1923
PFAM: protein of unknown function DUF606; KEGG: rme:Rmet_5246 protein of unknown function DUF606.
       0.655
Plim_0708
PFAM: putative esterase; KEGG: sus:Acid_2103 putative esterase.
 
     0.652
Plim_1922
Dipeptidyl aminopeptidase/acylaminoacyl- peptidase-like protein; KEGG: hch:HCH_01563 esterase/lipase.
 
     0.632
Plim_3779
Pectate lyase.
 
   
 0.588
Plim_3795
Esterase/lipase.
  
     0.550
Plim_1672
6-deoxyerythronolide-B synthase., (Acyl-carrier- protein) S-malonyltransferase; PFAM: Beta-ketoacyl synthase; peptidase C45 acyl- coenzyme A:6-aminopenicillanic acid acyl-transferase; Acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; KEGG: acp:A2cp1_4042 beta-ketoacyl synthase.
  
 
 0.456
Plim_3862
NADH-quinone oxidoreductase, F subunit.
    
   0.428
Plim_3863
Ferredoxin.
    
   0.428
Plim_1442
PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: sus:Acid_7528 NAD-dependent epimerase/dehydratase.
   
   0.427
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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